STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN97_18565Plasmid replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)    
Predicted Functional Partners:
CN97_18575
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.783
CN97_18570
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.779
CN97_02020
Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.756
CN97_02010
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.719
CN97_18560
RNA polymerase ECF-subfamily sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.588
CN97_14330
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.556
CN97_10000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.505
CN97_10010
Phage antirepressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.505
CN97_08925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
Your Current Organism:
Haematobacter massiliensis
NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise
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