Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY59276.1 | AFY59277.1 | Syn6312_0017 | Syn6312_0018 | Hypothetical protein. | Virulence-associated protein. | 0.572 |
AFY59276.1 | vapC | Syn6312_0017 | Syn6312_0016 | Hypothetical protein. | Putative nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | 0.481 |
AFY59277.1 | AFY59276.1 | Syn6312_0018 | Syn6312_0017 | Virulence-associated protein. | Hypothetical protein. | 0.572 |
AFY59277.1 | AFY60250.1 | Syn6312_0018 | Syn6312_1056 | Virulence-associated protein. | Putative nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain. | 0.743 |
AFY59277.1 | AFY61416.1 | Syn6312_0018 | Syn6312_2301 | Virulence-associated protein. | Putative nucleic acid-binding protein, contains PIN domain. | 0.743 |
AFY59277.1 | AFY61424.1 | Syn6312_0018 | Syn6312_2309 | Virulence-associated protein. | PFAM: Amino acid permease. | 0.444 |
AFY59277.1 | vapC | Syn6312_0018 | Syn6312_0016 | Virulence-associated protein. | Putative nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | 0.832 |
AFY60250.1 | AFY59277.1 | Syn6312_1056 | Syn6312_0018 | Putative nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain. | Virulence-associated protein. | 0.743 |
AFY61416.1 | AFY59277.1 | Syn6312_2301 | Syn6312_0018 | Putative nucleic acid-binding protein, contains PIN domain. | Virulence-associated protein. | 0.743 |
AFY61424.1 | AFY59277.1 | Syn6312_2309 | Syn6312_0018 | PFAM: Amino acid permease. | Virulence-associated protein. | 0.444 |
vapC | AFY59276.1 | Syn6312_0016 | Syn6312_0017 | Putative nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | Hypothetical protein. | 0.481 |
vapC | AFY59277.1 | Syn6312_0016 | Syn6312_0018 | Putative nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | Virulence-associated protein. | 0.832 |