STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY60142.1Hypothetical protein. (74 aa)    
Predicted Functional Partners:
AFY60284.1
Hypothetical protein.
  
     0.749
AFY62756.1
Hypothetical protein.
  
     0.728
AFY62532.1
PFAM: Protein of unknown function (DUF2993).
  
     0.723
AFY60270.1
Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.680
AFY61277.1
Hypothetical protein.
  
     0.638
AFY62765.1
Hypothetical protein.
  
     0.618
AFY60144.1
Hypothetical protein.
 
     0.608
AFY61746.1
Peroxiredoxin; PFAM: AhpC/TSA family.
  
     0.606
AFY62371.1
Hypothetical protein.
  
     0.601
AFY61983.1
Hypothetical protein.
  
     0.566
Your Current Organism:
Synechococcus sp. PCC6312
NCBI taxonomy Id: 195253
Other names: S. sp. PCC 6312, Synechococcus sp. ATCC 27167, Synechococcus sp. PCC 6312
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