STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY60821.1Hypothetical protein. (313 aa)    
Predicted Functional Partners:
AFY60819.1
Putative nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain.
       0.603
AFY60820.1
Hypothetical protein.
       0.603
AFY60822.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
       0.584
AFY60823.1
Zeta-carotene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; three-step phytoene desaturase.
       0.584
AFY60817.1
PFAM: Protein of unknown function DUF86.
       0.501
AFY60818.1
PFAM: Nucleotidyltransferase domain; manually curated.
       0.501
Your Current Organism:
Synechococcus sp. PCC6312
NCBI taxonomy Id: 195253
Other names: S. sp. PCC 6312, Synechococcus sp. ATCC 27167, Synechococcus sp. PCC 6312
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.