node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY61282.1 | rplA | Syn6312_2164 | Syn6312_1885 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.993 |
AFY61282.1 | rplJ | Syn6312_2164 | Syn6312_1886 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.993 |
AFY61282.1 | rplK | Syn6312_2164 | Syn6312_1884 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.993 |
AFY61282.1 | rplM | Syn6312_2164 | Syn6312_3165 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.994 |
AFY61282.1 | rplU | Syn6312_2164 | Syn6312_0618 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.992 |
AFY61282.1 | rpsB | Syn6312_2164 | Syn6312_0813 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family. | 0.994 |
AFY61282.1 | rpsD | Syn6312_2164 | Syn6312_0531 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.992 |
AFY61282.1 | rpsF | Syn6312_2164 | Syn6312_2745 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.993 |
AFY61282.1 | rpsI | Syn6312_2164 | Syn6312_3164 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. | 0.993 |
AFY61282.1 | rpsJ | Syn6312_2164 | Syn6312_1237 | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.993 |
rplA | AFY61282.1 | Syn6312_1885 | Syn6312_2164 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L25 (general stress protein Ctc); PFAM: Ribosomal L25p family; Belongs to the bacterial ribosomal protein bL25 family. | 0.993 |
rplA | rplJ | Syn6312_1885 | Syn6312_1886 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
rplA | rplK | Syn6312_1885 | Syn6312_1884 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
rplA | rplM | Syn6312_1885 | Syn6312_3165 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplA | rplU | Syn6312_1885 | Syn6312_0618 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
rplA | rpsB | Syn6312_1885 | Syn6312_0813 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
rplA | rpsD | Syn6312_1885 | Syn6312_0531 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.995 |
rplA | rpsF | Syn6312_1885 | Syn6312_2745 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.995 |
rplA | rpsI | Syn6312_1885 | Syn6312_3164 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
rplA | rpsJ | Syn6312_1885 | Syn6312_1237 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.995 |