STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY62251.1K+ transport system, NAD-binding component; PFAM: TrkA-N domain; Ion channel; TrkA-C domain. (360 aa)    
Predicted Functional Partners:
AFY62252.1
K+ transport system, NAD-binding component; PFAM: TrkA-N domain; TrkA-C domain.
 
    
0.791
AFY60799.1
PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family.
  
 
 0.498
AFY59459.1
Ribosomal RNA small subunit methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.468
AFY60267.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
    0.445
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.431
Your Current Organism:
Synechococcus sp. PCC6312
NCBI taxonomy Id: 195253
Other names: S. sp. PCC 6312, Synechococcus sp. ATCC 27167, Synechococcus sp. PCC 6312
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