STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B1A75_036604-diphosphocytidyl-2C-methyl-D-erythritol kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (52 aa)    
Predicted Functional Partners:
OPX04008.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
OPX04363.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.590
OPX03315.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.558
sspI
Small acid-soluble spore protein SspI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspI family.
  
  
 0.557
OPX04364.1
Sporulation peptidase YabG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.555
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.502
OPX01843.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.476
OPX04730.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.447
OPX04621.1
Sporulation integral membrane protein YlbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
OPX04361.1
Pur operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.432
Your Current Organism:
Geobacillus sp. LEMMY01
NCBI taxonomy Id: 1954237
Other names: G. sp. LEMMY01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.