B1A75_16885 protein (Geobacillus sp. LEMMY01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B1A75_16885

Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family. (235 aa)

Predicted Functional Partners:

hmp

0.989

OPX01046.1

0.634

OPX02792.1

0.511

B1A75_11795

0.495

B1A75_16855

0.458

OPX03798.1

0.453

OPX02641.1

0.449

OPX02298.1

0.408

OPX01143.1

0.408

Your Current Organism:

Geobacillus sp. LEMMY01

NCBI taxonomy Id: 1954237
Other names: G. sp. LEMMY01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B1A75_11795	B1A75_16855	B1A75_11795	B1A75_16855	Nitrate reductase molybdenum cofactor assembly chaperone; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
B1A75_11795	B1A75_16885	B1A75_11795	B1A75_16885	Nitrate reductase molybdenum cofactor assembly chaperone; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	0.495
B1A75_11795	OPX01046.1	B1A75_11795	B1A75_16935	Nitrate reductase molybdenum cofactor assembly chaperone; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM/SPASM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
B1A75_16855	B1A75_11795	B1A75_16855	B1A75_11795	Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase molybdenum cofactor assembly chaperone; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
B1A75_16855	B1A75_16885	B1A75_16855	B1A75_16885	Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	0.458
B1A75_16855	OPX01046.1	B1A75_16855	B1A75_16935	Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM/SPASM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
B1A75_16885	B1A75_11795	B1A75_16885	B1A75_11795	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	Nitrate reductase molybdenum cofactor assembly chaperone; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
B1A75_16885	B1A75_16855	B1A75_16885	B1A75_16855	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
B1A75_16885	OPX01046.1	B1A75_16885	B1A75_16935	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	Radical SAM/SPASM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
B1A75_16885	OPX01143.1	B1A75_16885	B1A75_16590	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
B1A75_16885	OPX02298.1	B1A75_16885	B1A75_13935	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
B1A75_16885	OPX02641.1	B1A75_16885	B1A75_12080	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
B1A75_16885	OPX02792.1	B1A75_16885	B1A75_11215	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
B1A75_16885	OPX03798.1	B1A75_16885	B1A75_06080	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
B1A75_16885	hmp	B1A75_16885	B1A75_13915	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	Nitric oxide dioxygenase; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.	0.989
OPX01046.1	B1A75_11795	B1A75_16935	B1A75_11795	Radical SAM/SPASM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase molybdenum cofactor assembly chaperone; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
OPX01046.1	B1A75_16855	B1A75_16935	B1A75_16855	Radical SAM/SPASM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
OPX01046.1	B1A75_16885	B1A75_16935	B1A75_16885	Radical SAM/SPASM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	0.634
OPX01143.1	B1A75_16885	B1A75_16590	B1A75_16885	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.	0.408
OPX01143.1	OPX02298.1	B1A75_16590	B1A75_13935	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408