STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_0166ABC-type cobalt transport system, permease component CbiQ-related transporters; COG0619. (219 aa)    
Predicted Functional Partners:
BD01_0168
ABC-type Co2+ transport system, permease component; COG0310.
 
 0.998
BD01_0165
Ribosomal protein L34; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 0.996
BD01_0167
Putative membrane protein, conserved.
  
 0.992
BD01_0707
Ribosomal protein L34.
 
 
 0.885
BD01_0346
Ribosomal protein L34.
 
 
 0.843
BD01_0708
Ribosomal protein L32.
  
 
 0.780
BD01_1868
Putative membrane protein; COG4720.
  
 
 0.732
truA
Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
  
 0.646
BD01_0169
Uncharacterized protein (ATP-grasp superfamily); COG2047.
       0.554
nop10
Putative Zn-ribbon RNA-binding protein; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.
       0.554
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.