STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_0274Saccharopine dehydrogenase-related protein; COG1748. (357 aa)    
Predicted Functional Partners:
nep1
Hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.
       0.819
BD01_0272
Hypothetical protein.
       0.681
BD01_0273
Metal-dependent phosphoesterase, putative.
       0.681
BD01_0276
Putative membrane protein, conserved.
       0.641
eif5a
Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
       0.573
BD01_0877
NAD-dependent aldehyde dehydrogenase; COG1012; Belongs to the aldehyde dehydrogenase family.
 
  
 0.566
mfnA
Glutamate decarboxylase-related PLP-dependent protein; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
 
   
 0.518
BD01_0281
Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; COG0010; Belongs to the arginase family.
 
   
 0.491
BD01_0279
Na+/H+ antiporter NhaD-related arsenite permease; COG1055.
       0.434
BD01_0914
Lactoylglutathione lyase-related lyase; COG0346.
 
  
 0.409
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.