STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_0463Ribosomal protein S16. (261 aa)    
Predicted Functional Partners:
BD01_0462
ABC-type transport system involved in Fe-S cluster assembly, permease component; COG0719.
 
 0.999
BD01_0107
Selenocysteine lyase; COG0520.
 
  
 0.951
BD01_2059
Selenocysteine lyase; COG0520.
 
  
 0.872
BD01_1989
Putative metal-sulfur cluster biosynthetic enzyme; COG2151.
 
  
 0.777
BD01_2130
DNA polymerase elongation subunit (family B); COG0417.
       0.702
BD01_0464
Putative ATP-dependent protease; COG1067; Belongs to the peptidase S16 family.
  
    0.656
infB
Translation initiation factor 2 (IF-2, GTPase); Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
     
 0.582
BD01_0466
Putative translation initiation inhibitor, yjgF family; COG0251.
     
 0.526
BD01_2017
Hypothetical protein; COG0393; Belongs to the UPF0145 family.
  
  
 0.514
BD01_0765
Fe2+ transport system protein B; COG0370.
     
 0.492
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.