STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_0628Putative membrane protein; COG2426. (153 aa)    
Predicted Functional Partners:
BD01_0629
Membrane-associated phospholipid phosphatase; COG0671.
       0.819
BD01_0627
Permeases of the major facilitator superfamily; COG0477.
       0.773
BD01_0630
Hypothetical protein; COG2411.
       0.753
BD01_0631
Putative hydrolase (HAD superfamily); COG1011.
       0.753
cobB
NAD-dependent protein deacetylase, SIR2 family; COG0846; Belongs to the sirtuin family. Class III subfamily.
       0.677
BD01_0632
Hypothetical protein.
       0.629
BD01_0634
Amino acid permease; COG0814.
 
     0.508
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.