STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_1053Ribosomal protein L9. (261 aa)    
Predicted Functional Partners:
cysS
Cysteinyl-tRNA synthetase; COG0215.
  
 
 0.948
hcp
6Fe-6S prismane cluster-containing protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.934
BD01_1052
Hypothetical protein.
       0.814
BD01_1054
Hypothetical protein.
       0.741
BD01_0877
NAD-dependent aldehyde dehydrogenase; COG1012; Belongs to the aldehyde dehydrogenase family.
 
 
 0.702
BD01_1926
Phosphoglycerate dehydrogenase-related dehydrogenase; COG0111; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.699
glyA
Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
 
  
 0.670
BD01_0963
Molybdopterin converting factor, small subunit; COG1977.
  
 
 0.669
BD01_1853
Molybdopterin converting factor, small subunit; COG1977.
  
 
 0.669
ahcY
S-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
  
 
 0.668
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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