STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_1191Uncharacterized protein conserved in archaea; COG1673; Belongs to the UPF0310 family. (143 aa)    
Predicted Functional Partners:
BD01_1187
Type I site-specific restriction-modification system, R (restriction) subunit-related helicase; COG0610.
 
     0.809
BD01_1190
Transglutaminase-like enzyme, putative cysteine protease; COG1305.
       0.769
BD01_1189
Hypothetical protein.
       0.747
BD01_1188
Putative metal-dependent hydrolase; COG1451.
       0.734
BD01_1185
Hypothetical protein.
       0.696
BD01_1186
Hypothetical protein.
       0.694
BD01_0088
Hypothetical protein.
       0.685
BD01_0089
Type I restriction-modification system methyltransferase subunit; COG0286.
       0.685
BD01_1184
Restriction endonuclease S subunits; COG0732.
 
     0.589
BD01_1183
Type I restriction-modification system methyltransferase subunit; COG0286.
 
     0.571
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.