Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BD01_1237ABC-type Fe3+-siderophore transport system, permease component; COG0609. (361 aa)    
Predicted Functional Partners:
BD01_1236
Ribosomal protein S16.
 
 
 0.989
BD01_0873
Ribosomal protein L34.
 
 
 0.885
psmB
20S proteasome, alpha and beta subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
       0.878
BD01_0443
ABC-type Fe3+-hydroxamate transport system, periplasmic component; COG0614.
 
 
 0.875
BD01_0145
Ribosomal protein L34.
 
 
 0.860
BD01_0875
ABC-type Fe3+-hydroxamate transport system, periplasmic component; COG0614.
 
 
 0.857
BD01_1233
Threonine synthase; COG0498.
       0.824
BD01_1238
Ribosomal protein (S18)-alanine acetyltransferase.
       0.815
endA
tRNA splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
       0.815
BD01_1234
Hypothetical protein.
       0.812
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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