STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_1385Putative Fe-S-cluster oxidoreductase; COG0727. (171 aa)    
Predicted Functional Partners:
BD01_1386
Hypothetical protein.
       0.730
BD01_1387
Protein involved in ribosomal biogenesis, contains PUA domain; COG1374.
       0.710
BD01_1384
Hypothetical protein; COG3247.
       0.562
BD01_1388
RecA-superfamily ATPases implicated in signal transduction; COG0467; Belongs to the UPF0273 family.
       0.543
BD01_0684
Hypothetical protein; COG1633.
 
     0.523
BD01_1389
Putative transcriptional regulators; COG1318.
       0.513
BD01_0247
Probable Brix domain-containing ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.
  
     0.461
BD01_0233
Transcription elongation factor; COG0195.
 
     0.434
BD01_1623
Hypothetical protein.
  
     0.416
BD01_1968
Putative archaeal coiled-coil protein; COG1340.
  
     0.405
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.