STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_1408ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; COG1173. (423 aa)    
Predicted Functional Partners:
BD01_1409
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; COG0601.
 
  
 0.939
BD01_1413
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; COG0601.
 
  
 0.887
BD01_1407
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; COG0601.
 
  
 0.884
BD01_1418
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; COG0601.
 
  
 0.811
BD01_1420
Ribosomal protein L9.
 
  
 0.785
BD01_1341
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; COG0601.
 
  
 0.775
BD01_1343
Ribosomal protein L9.
 
  
 0.749
BD01_1340
ABC-type dipeptide transport system, periplasmic component; COG0747.
 
 
 0.718
BD01_1092
Ribosomal protein S21.
 
  
 0.701
BD01_1094
Ribosomal protein L17.
 
  
 0.696
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.