STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_1783Flp pilus assembly protein TadC; COG2064. (303 aa)    
Predicted Functional Partners:
BD01_1785
Intein/homing endonuclease; COG1372.
 
  
 0.988
BD01_1784
Flp pilus assembly protein TadC; COG2064.
 
  
0.966
BD01_1787
Uncharacterized protein conserved in archaea; COG1627.
     
 0.839
BD01_1142
Archaeal flagellar protein FlaI; COG0630.
 
  
 0.820
BD01_1786
Hypothetical protein.
       0.819
BD01_1788
Hypothetical protein.
       0.680
BD01_1789
Putative GTPase; COG1161.
       0.680
BD01_1790
Putative N6-adenine-specific DNA methylase; COG0116.
       0.680
BD01_0803
Hypothetical protein; COG1430.
 
     0.488
BD01_1013
ATPases involved in chromosome partitioning; COG0455.
 
  
 0.421
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.