Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BD01_2000 | BD01_2001 | Glycosyltransferases involved in cell wall biogenesis; COG0463. | RecA-superfamily ATPases implicated in signal transduction; COG0467. | 0.592 |
BD01_2000 | BD01_2002 | Glycosyltransferases involved in cell wall biogenesis; COG0463. | Hypothetical protein. | 0.619 |
BD01_2000 | BD01_2003 | Glycosyltransferases involved in cell wall biogenesis; COG0463. | Putative aminopeptidase; COG2234. | 0.635 |
BD01_2001 | BD01_2000 | RecA-superfamily ATPases implicated in signal transduction; COG0467. | Glycosyltransferases involved in cell wall biogenesis; COG0463. | 0.592 |
BD01_2001 | BD01_2002 | RecA-superfamily ATPases implicated in signal transduction; COG0467. | Hypothetical protein. | 0.820 |
BD01_2001 | BD01_2003 | RecA-superfamily ATPases implicated in signal transduction; COG0467. | Putative aminopeptidase; COG2234. | 0.668 |
BD01_2002 | BD01_2000 | Hypothetical protein. | Glycosyltransferases involved in cell wall biogenesis; COG0463. | 0.619 |
BD01_2002 | BD01_2001 | Hypothetical protein. | RecA-superfamily ATPases implicated in signal transduction; COG0467. | 0.820 |
BD01_2002 | BD01_2003 | Hypothetical protein. | Putative aminopeptidase; COG2234. | 0.738 |
BD01_2003 | BD01_2000 | Putative aminopeptidase; COG2234. | Glycosyltransferases involved in cell wall biogenesis; COG0463. | 0.635 |
BD01_2003 | BD01_2001 | Putative aminopeptidase; COG2234. | RecA-superfamily ATPases implicated in signal transduction; COG0467. | 0.668 |
BD01_2003 | BD01_2002 | Putative aminopeptidase; COG2234. | Hypothetical protein. | 0.738 |