STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_2028Hypothetical protein; COG2454. (224 aa)    
Predicted Functional Partners:
BD01_2029
Hypothetical protein; COG3294.
       0.786
BD01_2027
Hypothetical protein.
       0.678
BD01_2025
Small-conductance mechanosensitive channel; COG0668.
       0.633
BD01_2026
Hypothetical protein; COG2430.
       0.633
BD01_2030
Hypothetical protein.
       0.483
BD01_2031
Hypothetical protein.
       0.483
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
 
     0.463
BD01_0627
Permeases of the major facilitator superfamily; COG0477.
  
    0.454
BD01_0570
Permeases of the major facilitator superfamily; COG0477.
  
    0.408
BD01_1107
Permeases of the major facilitator superfamily; COG0477.
  
    0.408
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.