Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BD01_0266 | BD01_2100 | BD01_0266 | BD01_2100 | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | 0.909 |
BD01_0266 | tbp | BD01_0266 | BD01_1715 | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | TATA-box binding protein (TBP), component of TFIID and TFIIIB; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.696 |
BD01_2097 | BD01_2099 | BD01_2097 | BD01_2099 | Putative exosome subunit; COG1500. | Hypothetical protein. | 0.704 |
BD01_2097 | BD01_2100 | BD01_2097 | BD01_2100 | Putative exosome subunit; COG1500. | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | 0.554 |
BD01_2097 | psmA | BD01_2097 | BD01_2098 | Putative exosome subunit; COG1500. | 20S proteasome, alpha and beta subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.894 |
BD01_2097 | rrp4 | BD01_2097 | BD01_2096 | Putative exosome subunit; COG1500. | RNA-binding protein Rrp4 and related proteins (containing S1 domain and KH domain); Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.881 |
BD01_2097 | rrp42 | BD01_2097 | BD01_2094 | Putative exosome subunit; COG1500. | RNase PH-related exoribonuclease; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.889 |
BD01_2099 | BD01_2097 | BD01_2099 | BD01_2097 | Hypothetical protein. | Putative exosome subunit; COG1500. | 0.704 |
BD01_2099 | BD01_2100 | BD01_2099 | BD01_2100 | Hypothetical protein. | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | 0.689 |
BD01_2099 | BD01_2101 | BD01_2099 | BD01_2101 | Hypothetical protein. | Hypothetical protein. | 0.424 |
BD01_2099 | BD01_2102 | BD01_2099 | BD01_2102 | Hypothetical protein. | Hypothetical protein. | 0.409 |
BD01_2099 | BD01_2103 | BD01_2099 | BD01_2103 | Hypothetical protein. | Hypothetical protein. | 0.409 |
BD01_2099 | psmA | BD01_2099 | BD01_2098 | Hypothetical protein. | 20S proteasome, alpha and beta subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.709 |
BD01_2099 | rrp4 | BD01_2099 | BD01_2096 | Hypothetical protein. | RNA-binding protein Rrp4 and related proteins (containing S1 domain and KH domain); Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.704 |
BD01_2099 | rrp42 | BD01_2099 | BD01_2094 | Hypothetical protein. | RNase PH-related exoribonuclease; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.704 |
BD01_2100 | BD01_0266 | BD01_2100 | BD01_0266 | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | 0.909 |
BD01_2100 | BD01_2097 | BD01_2100 | BD01_2097 | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | Putative exosome subunit; COG1500. | 0.554 |
BD01_2100 | BD01_2099 | BD01_2100 | BD01_2099 | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | Hypothetical protein. | 0.689 |
BD01_2100 | BD01_2101 | BD01_2100 | BD01_2101 | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | Hypothetical protein. | 0.570 |
BD01_2100 | BD01_2102 | BD01_2100 | BD01_2102 | Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; COG0537. | Hypothetical protein. | 0.548 |
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