STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_2115Ribosomal protein S16. (242 aa)    
Predicted Functional Partners:
BD01_2116
ABC-type multidrug transport system, permease component; COG0842.
  
 0.980
BD01_1067
Putative transcriptional regulators; COG1695.
  
  
 0.826
BD01_2117
Putative transcriptional regulators; COG1695.
  
  
 0.684
BD01_2118
Permeases of the major facilitator superfamily; COG0477.
     
 0.625
BD01_0086
Na+-driven multidrug efflux pump; COG0534.
  
  
 0.619
BD01_0087
Na+-driven multidrug efflux pump; COG0534.
  
  
 0.619
BD01_0320
ABC-type transport system involved in multi-copper enzyme maturation, permease component; COG1277.
  
 
 0.586
BD01_1005
ABC-type transport system involved in multi-copper enzyme maturation, permease component; COG1277.
  
 
 0.586
BD01_1073
ABC-type transport system involved in multi-copper enzyme maturation, permease component; COG1277.
  
 
 0.586
BD01_2114
Putative transcriptional regulators; COG1378.
     
 0.558
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.