STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX27385.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (170 aa)    
Predicted Functional Partners:
OPX27386.1
Exodeoxyribonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
OPX27818.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.767
OPX27482.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.731
luxS
S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
  
 
 0.646
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
 0.627
mqnD
succinate--CoA ligase; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.
    
 0.616
OPX26554.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.591
B1H07_04300
Thymidylate synthase (FAD); Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.573
OPX27147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.540
OPX27387.1
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
Your Current Organism:
Campylobacteraceae bacterium 4484166
NCBI taxonomy Id: 1956165
Other names: C. bacterium 4484_166, Campylobacteraceae bacterium 4484_166
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.