STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX29179.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (166 aa)    
Predicted Functional Partners:
OPX29178.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
OPX29177.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.777
secD
Hypothetical protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.735
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.640
OPX29176.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.623
OPX31852.1
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.587
OPX31348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.581
OPX30536.1
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.565
OPX29174.1
DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
OPX29175.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
Your Current Organism:
Gemmatimonadaceae bacterium 4484173
NCBI taxonomy Id: 1956166
Other names: G. bacterium 4484_173, Gemmatimonadaceae bacterium 4484_173
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.