STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX28687.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)    
Predicted Functional Partners:
OPX28688.1
Rubrerythrin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.840
OPX28692.1
High molecular weight rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.825
OPX28689.1
Desulfoferrodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.769
OPX28690.1
Ferritin; Iron-storage protein.
     
 0.767
OPX28691.1
MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.717
OPX28693.1
TIGR02757 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.709
OPX28694.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.653
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.636
OPX31599.1
Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.552
OPX28343.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.461
Your Current Organism:
Gemmatimonadaceae bacterium 4484173
NCBI taxonomy Id: 1956166
Other names: G. bacterium 4484_173, Gemmatimonadaceae bacterium 4484_173
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.