STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csd_1Putative cysteine desulfurase. (231 aa)    
Predicted Functional Partners:
sufU
Zinc-dependent sulfurtransferase SufU.
 
 0.994
sufC
Vegetative protein 296.
 
 
 0.940
sufB
FeS cluster assembly protein SufB.
 
 0.911
sufD
FeS cluster assembly protein SufD.
 
 0.899
sufS
Cysteine desulfurase.
  
  
  0.872
csd_2
Putative cysteine desulfurase.
  
  
 
0.777
selD
Selenide, water dikinase.
    
 0.755
moeZ_2
Putative adenylyltransferase/sulfurtransferase MoeZ.
  
 
 0.747
trxB_1
Thioredoxin reductase.
  
 
  0.746
trxB_2
Thioredoxin reductase.
  
 
  0.746
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.