STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kynA_2Tryptophan 2,3-dioxygenase. (284 aa)    
Predicted Functional Partners:
kynU
Kynureninase.
 
 
 0.990
kynB
Kynurenine formamidase.
  
 
 0.854
dapb3_1
Dipeptidyl aminopeptidase BIII.
 
 
 0.835
GCA_000715605_00400
Hypothetical protein.
  
 
 0.779
GCA_000715605_04333
Hypothetical protein.
  
 
 0.779
aroP
Aromatic amino acid transport protein AroP.
       0.773
hisC_1
Histidinol-phosphate aminotransferase.
       0.773
trpA
Tryptophan synthase alpha chain.
     
 0.749
GCA_000715605_09861
Maf-like protein.
    
   0.701
dapC
Putative N-succinyldiaminopimelate aminotransferase DapC.
   
 
 0.699
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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