STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssgB_1Sporulation-specific cell division protein SsgB. (118 aa)    
Predicted Functional Partners:
ecfT
Energy-coupling factor transporter transmembrane protein EcfT.
       0.733
GCA_000715605_06358
Hypothetical protein.
  
     0.664
GCA_000715605_07944
Hypothetical protein.
  
     0.587
GCA_000715605_10256
Hypothetical protein.
  
     0.572
nikMN
Fused nickel transport protein NikMN.
       0.559
cbiO_2
Cobalt import ATP-binding protein CbiO.
       0.519
GCA_000715605_05917
Hypothetical protein.
  
     0.492
GCA_000715605_01825
Hypothetical protein.
  
     0.490
GCA_000715605_05196
Hypothetical protein.
  
     0.487
GCA_000715605_02443
Hypothetical protein.
  
     0.483
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.