STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagC_1N-acetylglucosamine repressor. (412 aa)    
Predicted Functional Partners:
GCA_000715605_07446
PTS system EIIBC component.
  
 0.983
fruA
PTS system fructose-specific EIIABC component.
    
 0.849
GCA_000715605_02104
Hypothetical protein.
     
 0.759
ugpA
Sn-glycerol-3-phosphate transport system permease protein UgpA.
     
 0.759
sugB_3
Trehalose transport system permease protein SugB.
     
 0.750
ptsG_1
PTS system glucose-specific EIICB component.
   
 0.722
nagE
PTS system N-acetylglucosamine-specific EIICBA component.
   
  0.667
ptsG_2
PTS system glucose-specific EIICB component.
   
  0.667
cugP_3
UTP--glucose-1-phosphate uridylyltransferase.
  
 
 0.666
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
 0.662
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.