STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000715605_02611Putative zinc protease. (457 aa)    
Predicted Functional Partners:
ctaC
Cytochrome c oxidase subunit 2.
   
 0.985
ctaE
Cytochrome c oxidase subunit 3.
   
 0.984
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
   
 0.975
petC_2
Cytochrome b6-f complex iron-sulfur subunit.
   
 0.973
qcrA
Cytochrome bc1 complex Rieske iron-sulfur subunit.
   
 0.973
nuoE
NADH-quinone oxidoreductase subunit E.
   
 0.967
qcrB_1
Cytochrome bc1 complex cytochrome b subunit.
    
 0.965
qcrB_2
Cytochrome bc1 complex cytochrome b subunit.
    
 0.965
atpA
ATP synthase subunit alpha.
   
 0.963
ndhI_1
NAD(P)H-quinone oxidoreductase subunit I.
  
 
 0.963
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.