STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
datD-alanine aminotransferase. (273 aa)    
Predicted Functional Partners:
ilvD_2
Dihydroxy-acid dehydratase.
  
 0.964
cimA
(R)-citramalate synthase.
 
 0.960
ilvD_1
Dihydroxy-acid dehydratase.
  
 0.960
leuA
2-isopropylmalate synthase.
  
 0.955
hom
Homoserine dehydrogenase.
  
 
 0.930
tdcB_1
L-threonine ammonia-lyase.
  
 
 0.922
psdht
Phenylserine dehydratase.
  
 
 0.922
GCA_000715605_03306
6-deoxy-6-sulfo-D-gluconate dehydratase.
  
 0.919
araC_2
L-arabonate dehydratase.
  
 0.919
thrB
Homoserine kinase.
  
 
 0.909
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.