STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carACarbamoyl-phosphate synthase small chain. (380 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase.
 
 0.999
pyrC
Dihydroorotase.
 
 0.999
carB
Carbamoyl-phosphate synthase large chain.
  
 0.999
allB
Allantoinase.
 
 
 0.992
purF
Amidophosphoribosyltransferase.
 
 
 0.986
GCA_000715605_03866
Hypothetical protein.
  
  
 0.977
pyrD
Dihydroorotate dehydrogenase (quinone).
 
  
 0.963
argG
Argininosuccinate synthase.
  
 
 0.960
pyrF
Orotidine 5'-phosphate decarboxylase.
 
  
 0.958
argF
Ornithine carbamoyltransferase.
  
 
 0.957
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.