STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigD_2RNA polymerase sigma-D factor. (280 aa)    
Predicted Functional Partners:
GCA_000715605_01489
Hypothetical protein.
  
 
 
 0.999
whiA
Sporulation transcription regulator WhiA.
      
 0.896
rpoB
DNA-directed RNA polymerase subunit beta.
    
 0.819
GCA_000715605_03860
Hypothetical protein.
  
   
 0.815
rpoC
DNA-directed RNA polymerase subunit beta'.
    
 0.814
GCA_000715605_00966
Hypothetical protein.
      
 0.787
GCA_000715605_04072
Hypothetical protein.
 
     0.774
rpoA
DNA-directed RNA polymerase subunit alpha.
    
 0.741
comM
Competence protein ComM.
       0.695
dprA
Putative DNA processing protein DprA.
       0.695
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.