STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgrELinear gramicidin dehydrogenase LgrE. (285 aa)    
Predicted Functional Partners:
dhbF_1
Dimodular nonribosomal peptide synthase.
 
 
 0.997
pikAIV
Narbonolide/10-deoxymethynolide synthase PikA4, module 6.
 
 
 0.991
dhbF_5
Dimodular nonribosomal peptide synthase.
 
 
 0.990
GCA_000715605_05123
Hypothetical protein.
 
 
 0.989
dhbF_3
Dimodular nonribosomal peptide synthase.
 
 
 0.978
dhbF_4
Dimodular nonribosomal peptide synthase.
 
 
 0.975
GCA_000715605_08790
Long-chain-fatty-acid--AMP ligase FadD26.
 
 
 0.967
dhbF_6
Dimodular nonribosomal peptide synthase.
 
 
 0.966
GCA_000715605_05141
Putative pyridoxal phosphate-dependent acyltransferase.
 
 
 0.946
eryA_1
6-deoxyerythronolide-B synthase EryA2, modules 3 and 4.
 
 
 0.937
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.