STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000715605_06001Hypothetical protein. (73 aa)    
Predicted Functional Partners:
fadJ_1
Fatty acid oxidation complex subunit alpha.
   
 
  0.592
fadJ_2
Fatty acid oxidation complex subunit alpha.
   
 
  0.592
adh1
Long-chain-alcohol dehydrogenase 1.
  
 
 0.560
gcvP
Putative glycine dehydrogenase (decarboxylating).
  
    0.515
GCA_000715605_06000
Hypothetical protein.
       0.483
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
   
 
 0.474
clpC1_1
ATP-dependent Clp protease ATP-binding subunit ClpC1.
  
    0.445
dhbF_3
Dimodular nonribosomal peptide synthase.
  
 
  0.412
dhbF_4
Dimodular nonribosomal peptide synthase.
  
 
  0.412
GCA_000715605_00585
Putative prophage phiRv2 integrase.
  
     0.408
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.