STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwhA_2N-acetylmuramoyl-L-alanine amidase A. (460 aa)    
Predicted Functional Partners:
GCA_000715605_07663
Hypothetical protein.
 
     0.746
ykfA
Putative murein peptide carboxypeptidase.
     
 0.709
nagZ_1
Beta-hexosaminidase.
    
 0.695
nagZ_2
Beta-hexosaminidase.
    
 0.695
ldtB_4
L,D-transpeptidase 2.
  
  
 0.675
GCA_000715605_01978
Hypothetical protein.
    
 0.671
GCA_000715605_01952
Hypothetical protein.
    
 0.640
GCA_000715605_09501
Zinc D-Ala-D-Ala carboxypeptidase.
  
  
  0.609
GCA_000715605_05588
Hypothetical protein.
     
 0.565
GCA_000715605_01341
N-acetylmuramoyl-L-alanine amidase.
     
 0.563
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.