STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
accA1_2Acetyl-/propionyl-coenzyme A carboxylase alpha chain. (312 aa)    
Predicted Functional Partners:
accD3
Putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
 
 0.999
fabD_1
Malonyl CoA-acyl carrier protein transacylase.
  
 0.998
GCA_000715605_05123
Hypothetical protein.
  
 
 0.994
GCA_000715605_07409
Methylmalonyl-CoA carboxyltransferase 12S subunit.
 
 0.994
GCA_000715605_01245
Methylmalonyl-CoA carboxyltransferase 12S subunit.
 
 0.993
accD5
Putative propionyl-CoA carboxylase beta chain 5.
 
 0.987
pccB
Propionyl-CoA carboxylase beta chain.
 
 0.985
rpoZ
DNA-directed RNA polymerase subunit omega.
   
  0.936
rpoA
DNA-directed RNA polymerase subunit alpha.
    
  0.916
rpoB
DNA-directed RNA polymerase subunit beta.
   
  0.909
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.