STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntR_2Putative D-xylose utilization operon transcriptional repressor. (234 aa)    
Predicted Functional Partners:
gntR_3
Putative D-xylose utilization operon transcriptional repressor.
  
     0.715
rspR_2
HTH-type transcriptional repressor RspR.
  
     0.702
mcbR_3
HTH-type transcriptional regulator McbR.
  
     0.686
GCA_000715605_07708
Hypothetical protein.
       0.681
GCA_000715605_07704
Hypothetical protein.
 
     0.668
GCA_000715605_07709
Hypothetical protein.
       0.651
mcbR_1
HTH-type transcriptional regulator McbR.
  
     0.590
lutR_3
HTH-type transcriptional regulator LutR.
  
  
 0.563
kipA
KipI antagonist.
       0.519
kipI
Kinase A inhibitor.
       0.519
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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