STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpd4-hydroxyphenylpyruvate dioxygenase. (185 aa)    
Predicted Functional Partners:
hmgA
Homogentisate 1,2-dioxygenase.
 
 0.998
GCA_000715605_06311
Hypothetical protein.
 
  
 0.955
pat_1
Putative phenylalanine aminotransferase.
    
  0.893
GCA_000715605_00179
Aspartate aminotransferase.
   
 
  0.891
aspC_2
Aspartate aminotransferase.
   
 
  0.891
gatA_2
Glutamyl-tRNA(Gln) amidotransferase subunit A.
  
 
  0.889
amiC
Putative amidase AmiC.
  
 
  0.889
aam_2
Acylamidase.
  
 
  0.889
GCA_000715605_03343
Putative aminotransferase.
    
  0.888
hisC_2
Histidinol-phosphate aminotransferase.
    
  0.888
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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