STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000715605_08615Hypothetical protein. (304 aa)    
Predicted Functional Partners:
rpsS
30S ribosomal protein S19.
    
  0.972
rpsK
30S ribosomal protein S11.
    
  0.968
rpsE
30S ribosomal protein S5.
    
 0.965
rpsJ
30S ribosomal protein S10.
   
  0.949
rpsD
30S ribosomal protein S4.
   
  0.948
rpsO
30S ribosomal protein S15.
   
  0.941
rpsB
30S ribosomal protein S2.
    
  0.936
rpsG
30S ribosomal protein S7.
   
 0.935
rpsH
30S ribosomal protein S8.
    
  0.931
stiP
Cysteine protease StiP.
   
  0.892
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.