Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000715605_08992 | sigE_4 | GCA_000715605_08992 | GCA_000715605_05027 | Hypothetical protein. | RNA polymerase sigma-E factor. | 0.759 |
GCA_000715605_08992 | sigE_7 | GCA_000715605_08992 | GCA_000715605_10218 | Hypothetical protein. | RNA polymerase sigma-E factor. | 0.759 |
GCA_000715605_08992 | sigK_2 | GCA_000715605_08992 | GCA_000715605_05451 | Hypothetical protein. | ECF RNA polymerase sigma factor SigK. | 0.468 |
GCA_000715605_08992 | sigL_5 | GCA_000715605_08992 | GCA_000715605_08991 | Hypothetical protein. | ECF RNA polymerase sigma factor SigL. | 0.999 |
GCA_000715605_08992 | sigR | GCA_000715605_08992 | GCA_000715605_09796 | Hypothetical protein. | ECF RNA polymerase sigma factor SigR. | 0.468 |
GCA_000715605_08992 | sigW_3 | GCA_000715605_08992 | GCA_000715605_06241 | Hypothetical protein. | ECF RNA polymerase sigma factor SigW. | 0.759 |
rpoA | rpoB | GCA_000715605_04685 | GCA_000715605_00170 | DNA-directed RNA polymerase subunit alpha. | DNA-directed RNA polymerase subunit beta. | 0.999 |
rpoA | rpoC | GCA_000715605_04685 | GCA_000715605_00169 | DNA-directed RNA polymerase subunit alpha. | DNA-directed RNA polymerase subunit beta'. | 0.999 |
rpoA | rpoZ | GCA_000715605_04685 | GCA_000715605_03881 | DNA-directed RNA polymerase subunit alpha. | DNA-directed RNA polymerase subunit omega. | 0.999 |
rpoA | sigE_4 | GCA_000715605_04685 | GCA_000715605_05027 | DNA-directed RNA polymerase subunit alpha. | RNA polymerase sigma-E factor. | 0.559 |
rpoA | sigE_7 | GCA_000715605_04685 | GCA_000715605_10218 | DNA-directed RNA polymerase subunit alpha. | RNA polymerase sigma-E factor. | 0.559 |
rpoA | sigK_2 | GCA_000715605_04685 | GCA_000715605_05451 | DNA-directed RNA polymerase subunit alpha. | ECF RNA polymerase sigma factor SigK. | 0.559 |
rpoA | sigL_5 | GCA_000715605_04685 | GCA_000715605_08991 | DNA-directed RNA polymerase subunit alpha. | ECF RNA polymerase sigma factor SigL. | 0.559 |
rpoA | sigR | GCA_000715605_04685 | GCA_000715605_09796 | DNA-directed RNA polymerase subunit alpha. | ECF RNA polymerase sigma factor SigR. | 0.938 |
rpoA | sigW_3 | GCA_000715605_04685 | GCA_000715605_06241 | DNA-directed RNA polymerase subunit alpha. | ECF RNA polymerase sigma factor SigW. | 0.559 |
rpoB | rpoA | GCA_000715605_00170 | GCA_000715605_04685 | DNA-directed RNA polymerase subunit beta. | DNA-directed RNA polymerase subunit alpha. | 0.999 |
rpoB | rpoC | GCA_000715605_00170 | GCA_000715605_00169 | DNA-directed RNA polymerase subunit beta. | DNA-directed RNA polymerase subunit beta'. | 0.999 |
rpoB | rpoZ | GCA_000715605_00170 | GCA_000715605_03881 | DNA-directed RNA polymerase subunit beta. | DNA-directed RNA polymerase subunit omega. | 0.999 |
rpoB | sigE_4 | GCA_000715605_00170 | GCA_000715605_05027 | DNA-directed RNA polymerase subunit beta. | RNA polymerase sigma-E factor. | 0.629 |
rpoB | sigE_7 | GCA_000715605_00170 | GCA_000715605_10218 | DNA-directed RNA polymerase subunit beta. | RNA polymerase sigma-E factor. | 0.629 |
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