STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000715605_09195Hypothetical protein. (194 aa)    
Predicted Functional Partners:
ribBA_1
Riboflavin biosynthesis protein RibBA.
    
  0.810
murB
UDP-N-acetylenolpyruvoylglucosamine reductase.
     
 0.642
cca
Multifunctional CCA protein.
    
 0.636
GCA_000715605_01615
Hypothetical protein.
 
  
  0.619
GCA_000715605_09196
Hypothetical protein.
       0.580
folE
GTP cyclohydrolase 1.
    
  0.574
pnp
Polyribonucleotide nucleotidyltransferase.
  
 
 0.560
rnj
Ribonuclease J.
   
 
 0.536
gltB
Glutamate synthase [NADPH] large chain.
     
 0.536
pheT
Phenylalanine--tRNA ligase beta subunit.
  
  
 0.470
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.