Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000715605_07791 | GCA_000715605_08999 | GCA_000715605_07791 | GCA_000715605_08999 | Hypothetical protein. | Hypothetical protein. | 0.858 |
GCA_000715605_07791 | rapA_1 | GCA_000715605_07791 | GCA_000715605_09301 | Hypothetical protein. | RNA polymerase-associated protein RapA. | 0.983 |
GCA_000715605_08999 | GCA_000715605_07791 | GCA_000715605_08999 | GCA_000715605_07791 | Hypothetical protein. | Hypothetical protein. | 0.858 |
GCA_000715605_08999 | rapA_1 | GCA_000715605_08999 | GCA_000715605_09301 | Hypothetical protein. | RNA polymerase-associated protein RapA. | 0.975 |
dnaN | polA | GCA_000715605_01678 | GCA_000715605_03120 | DNA polymerase III subunit beta. | DNA polymerase I. | 0.998 |
dnaN | rapA_1 | GCA_000715605_01678 | GCA_000715605_09301 | DNA polymerase III subunit beta. | RNA polymerase-associated protein RapA. | 0.946 |
dnaN | recA | GCA_000715605_01678 | GCA_000715605_06185 | DNA polymerase III subunit beta. | Protein RecA. | 0.968 |
dnaN | rpoA | GCA_000715605_01678 | GCA_000715605_04685 | DNA polymerase III subunit beta. | DNA-directed RNA polymerase subunit alpha. | 0.663 |
dnaN | rpoB | GCA_000715605_01678 | GCA_000715605_00170 | DNA polymerase III subunit beta. | DNA-directed RNA polymerase subunit beta. | 0.611 |
dnaN | rpoC | GCA_000715605_01678 | GCA_000715605_00169 | DNA polymerase III subunit beta. | DNA-directed RNA polymerase subunit beta'. | 0.546 |
dnaN | uvrD2 | GCA_000715605_01678 | GCA_000715605_07776 | DNA polymerase III subunit beta. | ATP-dependent DNA helicase UvrD2. | 0.986 |
polA | dnaN | GCA_000715605_03120 | GCA_000715605_01678 | DNA polymerase I. | DNA polymerase III subunit beta. | 0.998 |
polA | rapA_1 | GCA_000715605_03120 | GCA_000715605_09301 | DNA polymerase I. | RNA polymerase-associated protein RapA. | 0.965 |
polA | recA | GCA_000715605_03120 | GCA_000715605_06185 | DNA polymerase I. | Protein RecA. | 0.995 |
polA | rpoA | GCA_000715605_03120 | GCA_000715605_04685 | DNA polymerase I. | DNA-directed RNA polymerase subunit alpha. | 0.480 |
polA | rpoB | GCA_000715605_03120 | GCA_000715605_00170 | DNA polymerase I. | DNA-directed RNA polymerase subunit beta. | 0.533 |
polA | rpoC | GCA_000715605_03120 | GCA_000715605_00169 | DNA polymerase I. | DNA-directed RNA polymerase subunit beta'. | 0.451 |
polA | uvrD2 | GCA_000715605_03120 | GCA_000715605_07776 | DNA polymerase I. | ATP-dependent DNA helicase UvrD2. | 0.997 |
rapA_1 | GCA_000715605_07791 | GCA_000715605_09301 | GCA_000715605_07791 | RNA polymerase-associated protein RapA. | Hypothetical protein. | 0.983 |
rapA_1 | GCA_000715605_08999 | GCA_000715605_09301 | GCA_000715605_08999 | RNA polymerase-associated protein RapA. | Hypothetical protein. | 0.975 |
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