STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BZK31_16820Pyridoxal-5'-phosphate-dependent protein. (669 aa)    
Predicted Functional Partners:
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
  
 
 0.894
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.870
BZK31_19445
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 
0.827
BZK31_19685
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 
0.823
BZK31_05050
Arginase; Belongs to the arginase family.
  
 
 0.791
BZK31_16825
L-lysine 6-monooxygenase.
       0.789
BZK31_20840
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
 
 0.787
BZK31_16835
FAD-binding oxidoreductase.
  
 
 0.775
BZK31_21565
Agmatinase; Belongs to the arginase family.
  
 
 0.766
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
  
 0.737
Your Current Organism:
Pseudomonas floridensis
NCBI taxonomy Id: 1958950
Other names: ATCC TSD-90, LMG 30013, LMG:30013, P. floridensis, Pseudomonas floridae, Pseudomonas floridensis Timilsina et al. 2018, Pseudomonas sp. GEV358, Pseudomonas sp. GEV388, Pseudomonas sp. GEV392, strain GEV388
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.