STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK71234.1C4-dicarboxylate transporter, DctQ subunit. (258 aa)    
Predicted Functional Partners:
SFK71213.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.970
SFK71254.1
C4-dicarboxylate-binding protein DctP.
 
  
 0.905
SFL19642.1
Sulfotransferase family protein.
  
     0.600
SFK87990.1
C4-dicarboxylate transporter, DctM subunit.
  
 0.516
SFK85702.1
TRAP transporter, DctM subunit.
  
 0.516
SFL16175.1
TRAP transporter, DctM subunit.
  
 0.516
SFL28038.1
TRAP transporter, DctM subunit.
  
 0.516
SFL27434.1
TRAP transporter, DctM subunit.
  
 0.516
SFL30377.1
TRAP transporter, DctM subunit.
  
 0.516
SFL30965.1
Hypothetical protein.
  
 0.516
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.