Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFK71996.1 | SFK72014.1 | SAMN04488004_101157 | SAMN04488004_101158 | Hypothetical protein. | NADP-dependent 3-hydroxy acid dehydrogenase YdfG. | 0.634 |
SFK71996.1 | SFL14207.1 | SAMN04488004_101157 | SAMN04488004_108184 | Hypothetical protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.463 |
SFK71996.1 | SFL67461.1 | SAMN04488004_101157 | SAMN04488004_14010 | Hypothetical protein. | Type II secretion system protein E (GspE). | 0.573 |
SFK71996.1 | SFL67482.1 | SAMN04488004_101157 | SAMN04488004_14011 | Hypothetical protein. | General secretion pathway protein F. | 0.573 |
SFK71996.1 | pcm | SAMN04488004_101157 | SAMN04488004_101160 | Hypothetical protein. | protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.432 |
SFK71996.1 | purF | SAMN04488004_101157 | SAMN04488004_101156 | Hypothetical protein. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.462 |
SFK71996.1 | surE | SAMN04488004_101157 | SAMN04488004_101159 | Hypothetical protein. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.432 |
SFK72014.1 | SFK71996.1 | SAMN04488004_101158 | SAMN04488004_101157 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG. | Hypothetical protein. | 0.634 |
SFK72014.1 | pcm | SAMN04488004_101158 | SAMN04488004_101160 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG. | protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.652 |
SFK72014.1 | purF | SAMN04488004_101158 | SAMN04488004_101156 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.613 |
SFK72014.1 | surE | SAMN04488004_101158 | SAMN04488004_101159 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.653 |
SFL14207.1 | SFK71996.1 | SAMN04488004_108184 | SAMN04488004_101157 | Glutamate synthase (NADPH/NADH) large chain. | Hypothetical protein. | 0.463 |
SFL14207.1 | pcm | SAMN04488004_108184 | SAMN04488004_101160 | Glutamate synthase (NADPH/NADH) large chain. | protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.525 |
SFL14207.1 | purF | SAMN04488004_108184 | SAMN04488004_101156 | Glutamate synthase (NADPH/NADH) large chain. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.954 |
SFL67461.1 | SFK71996.1 | SAMN04488004_14010 | SAMN04488004_101157 | Type II secretion system protein E (GspE). | Hypothetical protein. | 0.573 |
SFL67461.1 | SFL67482.1 | SAMN04488004_14010 | SAMN04488004_14011 | Type II secretion system protein E (GspE). | General secretion pathway protein F. | 0.999 |
SFL67482.1 | SFK71996.1 | SAMN04488004_14011 | SAMN04488004_101157 | General secretion pathway protein F. | Hypothetical protein. | 0.573 |
SFL67482.1 | SFL67461.1 | SAMN04488004_14011 | SAMN04488004_14010 | General secretion pathway protein F. | Type II secretion system protein E (GspE). | 0.999 |
pcm | SFK71996.1 | SAMN04488004_101160 | SAMN04488004_101157 | protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | Hypothetical protein. | 0.432 |
pcm | SFK72014.1 | SAMN04488004_101160 | SAMN04488004_101158 | protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | NADP-dependent 3-hydroxy acid dehydrogenase YdfG. | 0.652 |
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