Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFK71631.1 | SFK78173.1 | SAMN04488004_101138 | SAMN04488004_10252 | OmpA family protein. | Opacity protein. | 0.475 |
SFK78173.1 | SFK71631.1 | SAMN04488004_10252 | SAMN04488004_101138 | Opacity protein. | OmpA family protein. | 0.475 |
SFK78173.1 | SFK79211.1 | SAMN04488004_10252 | SAMN04488004_102101 | Opacity protein. | Periplasmic chaperone for outer membrane proteins Skp. | 0.859 |
SFK78173.1 | SFL03958.1 | SAMN04488004_10252 | SAMN04488004_106219 | Opacity protein. | Lipid A 3-O-deacylase (PagL). | 0.474 |
SFK78173.1 | SFL06041.1 | SAMN04488004_10252 | SAMN04488004_10721 | Opacity protein. | Hypothetical protein. | 0.423 |
SFK78173.1 | SFL38646.1 | SAMN04488004_10252 | SAMN04488004_11675 | Opacity protein. | Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. | 0.506 |
SFK78173.1 | SFL44919.1 | SAMN04488004_10252 | SAMN04488004_11961 | Opacity protein. | Polyketide cyclase / dehydrase and lipid transport. | 0.465 |
SFK78173.1 | SFL48569.1 | SAMN04488004_10252 | SAMN04488004_12214 | Opacity protein. | Type I restriction enzyme M protein. | 0.493 |
SFK78173.1 | anmK | SAMN04488004_10252 | SAMN04488004_10251 | Opacity protein. | anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | 0.486 |
SFK78173.1 | rplU | SAMN04488004_10252 | SAMN04488004_102204 | Opacity protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.414 |
SFK78173.1 | secA | SAMN04488004_10252 | SAMN04488004_108155 | Opacity protein. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.401 |
SFK79211.1 | SFK78173.1 | SAMN04488004_102101 | SAMN04488004_10252 | Periplasmic chaperone for outer membrane proteins Skp. | Opacity protein. | 0.859 |
SFK79211.1 | rplU | SAMN04488004_102101 | SAMN04488004_102204 | Periplasmic chaperone for outer membrane proteins Skp. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.501 |
SFL03958.1 | SFK78173.1 | SAMN04488004_106219 | SAMN04488004_10252 | Lipid A 3-O-deacylase (PagL). | Opacity protein. | 0.474 |
SFL06041.1 | SFK78173.1 | SAMN04488004_10721 | SAMN04488004_10252 | Hypothetical protein. | Opacity protein. | 0.423 |
SFL06041.1 | SFL44919.1 | SAMN04488004_10721 | SAMN04488004_11961 | Hypothetical protein. | Polyketide cyclase / dehydrase and lipid transport. | 0.771 |
SFL38646.1 | SFK78173.1 | SAMN04488004_11675 | SAMN04488004_10252 | Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. | Opacity protein. | 0.506 |
SFL38646.1 | SFL48569.1 | SAMN04488004_11675 | SAMN04488004_12214 | Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. | Type I restriction enzyme M protein. | 0.998 |
SFL44919.1 | SFK78173.1 | SAMN04488004_11961 | SAMN04488004_10252 | Polyketide cyclase / dehydrase and lipid transport. | Opacity protein. | 0.465 |
SFL44919.1 | SFL06041.1 | SAMN04488004_11961 | SAMN04488004_10721 | Polyketide cyclase / dehydrase and lipid transport. | Hypothetical protein. | 0.771 |
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