STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK87662.1SnoaL-like domain-containing protein. (138 aa)    
Predicted Functional Partners:
SFK87643.1
Polysaccharide deacetylase.
 
  
  0.958
SFK87677.1
Allantoin racemase.
     0.937
SFK87696.1
Putative spermidine/putrescine transport system permease protein.
 
     0.862
SFK87705.1
Putative spermidine/putrescine transport system permease protein.
 
     0.837
SFK87722.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.788
SFL11705.1
OHCU decarboxylase.
    
  0.772
SFK87739.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.669
SFK87757.1
Transcriptional regulator, GntR family.
 
     0.537
SFL29772.1
Flagellar motility protein MotE, a chaperone for MotC folding.
 
     0.448
SFK87630.1
Peptide-methionine (R)-S-oxide reductase.
       0.417
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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