STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK85702.1TRAP transporter, DctM subunit. (498 aa)    
Predicted Functional Partners:
SFK85691.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.996
SFK85677.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.990
SFK98068.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.775
SFK88020.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.718
SFL30925.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.669
SFL30945.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.626
SFL16970.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
  
    0.537
SFK71234.1
C4-dicarboxylate transporter, DctQ subunit.
  
 0.516
SFL39983.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.507
SFL30360.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.490
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.