STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK90399.1Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase. (248 aa)    
Predicted Functional Partners:
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.785
SFK90357.1
Nucleoside-diphosphate-sugar epimerase.
       0.773
SFK90372.1
Uncharacterized protein, DUF1810 family.
       0.773
SFL02879.1
Fructose-bisphosphate aldolase, class I.
  
  
  0.766
SFK80460.1
Fructose-bisphosphate aldolase, class II.
  
 
 0.764
SFL62653.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
    
 0.746
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
  0.741
SFK78199.1
Arginine:pyruvate transaminase.
 
 
  0.634
SFK91387.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
   
    0.623
SFL24314.1
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
   
    0.623
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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